Instruments

Bruker timsTOF Ultra nanoLC/MS

The 2024 Bruker timsTOF Ultra enables proteomic analysis from extremely low sample amounts. Acknowledgement: "This work was supported by the Vincent Coates Foundation Mass Spectrometry Laboratory, Stanford University Mass Spectrometry (RRID:SCR_017801) utilizing the Bruker timsTOF Ultra nanoLC/MS system (RRID:SCR_025639)."

Sciex 7500+ mass spectrometer on a benchtop in the lab

Sciex 7500+ Triple Quadrupole LC/MS

Installed in late 2024, the Sciex 7500+ runs broad metabolomic panels and is open to medium access use. Acknowledgement: This work utilized the Sciex 7500+ LC/MS system (RRID:SCR_026608) that was purchased with funding from Stanford C-ShaRP (RRID:SCR_022986) and was supported by Stanford University Mass Spectrometry (RRID:SCR_017801)."

Scientist closely inspecting a large floor-standing mass spectrometer

Waters Cyclic Ion Mobility Imaging MS

An inaugural instrument of the Stanford Center for Imaging Mass Spectrometry (SCIMS), the Waters Cyclic IMS separates ions based on shape as well as mass-to-charge ratio. It is equipped with a desorption electrospray (DESI) source and images samples on glass slides. Acknowledgement: "This work was supported by the Vincent Coates Foundation Mass Spectrometry Laboratory, Stanford University Mass Spectrometry (RRID:SCR_017801) utilizing the Waters SELECT Series Cyclic IMS system (RRID:SCR_023939).

Scientist inserting a MALDI plate into the Waters MRT mass spectrometer

Waters MRT Imaging MS

An inaugural instrument of the Stanford Center for Imaging Mass Spectrometry (SCIMS), the Waters Multi-Reflecting TOF 's effective flight path of 47 meters results in resolution >200,000 FWHM and <500 ppb mass accuracty. It is equipped with both DESI and MALDI sources. Acknowledgement: "This work was supported by the Vincent Coates Foundation Mass Spectrometry Laboratory, Stanford University Mass Spectrometry (RRID:SCR_017801) utilizing the Waters SELECT Series MRT system (RRID:SCR_023938)."

Thermo Eclipse nanoLC/MS

The Eclipse was acquired in 2021 with federal funding that must be acknowledged: This work utilized the Thermo Orbitrap Eclipse nanoLC/MS system (RRID:SCR_022212) that was purchased with funding from National Institutes of Health Shared Instrumentation grant 1S10OD030473, and was supported by Stanford University Mass Spectrometry (RRID:SCR_017801)."

Thermo Exploris 480 nanoLC/MS

Acknowledgement: This work utilized the Thermo Exploris 480 nanoLC/MS system (RRID:SCR_022215) that was purchased with funding from Stanford C-ShaRP (RRID:SCR_022986) and was supported by Stanford University Mass Spectrometry (RRID:SCR_017801)."

Off-white and black benchtop mass spectrometer

Agilent 6495C Triple Quadrupole LC/MS

The Agilent 6495C platform for targeted quantitation was acquired in 2023 with federal funding that must be acknowledged: "This work utilized the Agilent 6495 Triple Quadrupole LC/MS system (RRID:SCR_023937) that was purchased with funding from National Institutes of Health Shared Instrumentation Grant 1S10OD034374, and was supported by Stanford University Mass Spectrometry (RRID:SCR_017801)."

Thermo Exploris 240 LC/MS

Open Access

Acknowledgement: This work utilized the Thermo Exploris 240 LC/MS system (RRID:SCR_022216) that was purchased with funding from Stanford C-ShaRP (RRID:SCR_022986) and was supported by Stanford University Mass Spectrometry (RRID:SCR_017801)."

Waters SQD2 LC/MS